>F54C4.1.1 unspliced + UTR + 2000 upstream + 2000 downstream; +ive strand; Sequence: 5685 bp
>Deletion size = 1473 bp
>mrpl-40 sgRNA #1, Chr III, CATAAAAACCGAGGAGCCGG; cut=87642; strand=-1; GC=45; 3'GG=yes; folding=-2.0
>mrpl-40 sgRNA #2, Chr III, CGAAACTACGAGGCTCCGGA; cut=89110; strand=+1; GC=60; 3'GG=no; folding=-0.4
| Name | Type | Orientation | Position |
|---|---|---|---|
| mrpl-40 SV F | primer_bind | forward | 1000..1021 |
| F54C4.4_Unspliced_UTR | gene | forward | 1119..1823 |
| mrpl-40 Upstream Homology Arm | misc_feature | forward | 1632..2081 |
| Left Deletion Flank | misc_structure | forward | 2052..2081 |
| mrpl-40 sgRNA #1 | protein_bind | reverse | 2082..2101 |
| mrpl-40 WT F | primer_bind | forward | 2590..2611 |
| mrpl-40 sgRNA #2 | protein_bind | forward | 3535..3554 |
| mrpl-40 Downstream Homology Arm | misc_feature | forward | 3555..3904 |
| Right Deletion Flank | misc_structure | forward | 3555..3584 |
| pat-4_Unspliced_UTR | gene | forward | 3895..5685 |
| mrpl-40 SV R | primer_bind | reverse | 4173..4194 |
aataattagcagaccaaagttgggtatgctaaataattagcagaccaaagttgggtctgctaaataattagcagtccaaagttgggtctgctaaatatttagcagaccatttttgggtatgctaaatatatattctcgtccattttcatcagttttggctcaattttcacgaaaatttttctcgaaatttacaaattttcctcgatttaccgaatccaacataggactatcgtcattttcctcgtcttcctcatgatcaataaccacttcttggccgacaatcatggaatttccgtctaaattcatgtccgagccgcccatcagctgataattggctccacggcgaacataatccccaagggaagtctcttcgtcaataattccgagtccgtgaaggcgagaagcttctttatcggttcctggaagcaaaaaatcgttttttcacagattttttaaaagatttattacttattgccgaatcatccacacattccactatcgttttcggacgttttcgaccgccgagaagctgttttgtggtgactcgttgcagtggaaccggagaatcttcgtattttttcggtcggccctggaaaaaattaaattttttttcgtttttcaatcagaatcttgaaatatccgccttacccttggttttttatcatcttcctgaccttctggccgtggatgtctgtgtcttttgtgtgcactgagacttcgatcggatttcccgacgtattcgcataaattgcactgaaaatcgatatttgtcggcacattcaccacgtccacatcgtcctgctcatcgtttttcatcattttttagctgaaaaataacatttttcaatttatttcgttaatttctttgcatttttccatttaaattcgaaagcgaagacgagagagcatgcaaaaacgagagagcgggagagaaaaagaaaaggataaacaatgttttcggcggcattcggagcgtcgtcagacgcgcgctgcgagacccaacagacgggaaatgtcatgcgcctttgattttacaatttatttcggctatttattgcggtttttttgcagtttttcgctcaattttcttctaaaatttgaataatacatgataaaaaaaaaatacataatttatttcgacagcgattgatacataatttcacaaatttacatggatttttgccacaaaattaaaaaaaaaataaaataaagaaagcacatttaaagtttattcatttgcttctccaaatgttccatatcccgcgcatcggctgactttgtgattctatcgaaaataagcttctgcgtctcctctaacatcttgagttgctctttattctgtaaaaaatcggcttttaggttggaaattttatttttctaaaaaacgtacgcttttcatactggtagcttgagataatcggctcttcatgctgctcagaaactcgtcaaagtccgatttggcgggtttcttgtgaattccagagtttttgacttttggaatggcgtttttcggttttttcgacgctttttcggttttcgatgcactacagttgctatttgctgaaaaaaaattcgattttatttgaaaaaaaacctgaattttaataaaaatttgataaaaaactcacaattggcagaaatccctgaagaactctgctcagcagccatcatggtctcctcgtcttcgaaaatggtttccatagtgttttagctgccaaatccttattaaaactcaaaaattgtcaataaaaacgcggaaaattgtccgaaaatcgattagggacgacgagagagtgtggggaagtgagagacggagcttgtgtagatttacggtgaacaacgcgtgggggtgggatagcggagtgtcgtttgggaatttattttattaaatttttattgtttttgttgatttttaggaggtttccttggttttttcgactattttcttcagaattttgatgattttgatgtaaaatcacttcaaattccaatttttccaggtaaaATGAGCTCCAGCCTGCTTGCGAGCCTCTCCCGGCTCTCCCTACTTCAAACCCGCCAAATTCATCAAACAATTCCCGCCGGCTCCTCGGTTTTTATGAAAAGACAGAAGAAAATTGATCCGGAGgtagagaaaattacagttactcattgaataaaacgggaaatttaataaaaattgagaaaaaattcaaaaattttccagGTAGCAAAGCAGCGAGAGACCCGACGCAGAAAACGGCTGGAAAAGGATATTCGTCAGATGCAAAAGCACTCGAAAAAGCCGAAACCAGTGGATGAGCTCACTTTGGACGTGAAATCCGCGAAAAATATCGGgtttttcagcgattttctgcctaaaaactcggaattcttacagAGAACGCCGCCGCCCACGCACCGAGCTCACCTTGGAGCAAATTGACGAACGAGCCATCGCTCTGAAGgtaaaaatctgagaatttcgcttcaaatccgtggattttcagGATTATACACGCTCCCGGTTGGCTTTGCAGCAGGAGGATGACGCGTGGATTCGTGGAGCCATCGAATCGCAGAGAAAAGCTCTAAATGAGCTGAAAATGCTCAAATTGGAGCTCTACGAGGCGGCTGTACAGCCAGCAGCCAAGGATTTACCGCTTATTGTTCAGgtagcggagaaattgaagaaaaatggtcaaaaaattgatgaaaaacccgaaaaactcacgaaaattcattaaaatcttaaaaattgctagaaattcggaaaaatgcccaaaattttagaaaatgtttaaatattcctgagaaaatgtcaaaaataccgaaatttattagtaaaatcttgaaaattttgccaaaaatctggaaaaacctggaattttcgactttttttttctaaaagtttcaaaattcccaaataatcattcaaaaaaaaaaactttctaaaaaatctctaaaatttttgcggaaattttgaaaaaattcactaaaaaattgaaatatccccggaaatttcgagaaaatccaaaaatttcggaaaatacacaaaaataccggtttttgctgaaaaagcacagaagttttgcgacaaaacctttaaaaatctgtaaaatcccccaaaaattttcaaattttttctcgaaaaattgcaaaaaatgtaaaaattcccccaaataatccgaaaatccaaaaaaattacctaaaaatcgggaaaattttgaaaaatccctgaaaattgtcgtaaaaataccaaaaatttcgctaaaaatctgaaaaattgctagaaattcgaaaaaaaatgcttaaaatttcagaaaatgttaaaaattcccaaaaaacatgtaaaatcttgagaaaatgtcaaaaataccgaaatttattagaaaaatctgaaaactcactgacattttgcgaaaaattccgaaaattggttaaaaaatttttttaaaaaacctggaattttccaaatttttttttctaaaaattaaaaaattccgaaaaatcctttaaaatttcttacagGGACCCTCACTGACTCCGCCCATTCGAAACTACGAGGCTCCGGACGGCGACTACATTGATACTACGAGAAATTGGGCATCTTAGagccgaaaattgttgatttttatgtgttttatgggtatttttgttgtagacagtgacataggatgacgcattaataaaggaattatcgatttttatggaaaaaactaaaaatttcagtgaaaccgagctggaaaaaataaatttgccactgcggggatcgaacccaggccctgtgattggcgggcgaggtcactagccactaggctacacgtgcaaatttttggcaactgattatttggatacatgaaacttactgcagcgaacttttttgtcgaagagtgtttgcgtacagtaatccttacatttcataagattttattgattttttcataaattgagcaattttttttgacagtttaacatttaaaattaatatatagacggaaaatgcgatggggctggacaaggagcaggcacttttgatgtaaagctttgataaattgaattttaaaaaaattgttgaaaacattagaaaagcaaaatcgataaatcataatatcattctctctaaaatcggaatgatttgatcaaagtttggccgacgtcccgggtcctcgttcatgcaaatgttcatcaaacggttcatattacgggcgattccagggggaatgtgcactcggagaccttccagagcgatctgaaattaataaatttggattcagcgtgaaatttgggtctggaaacgctgattttggaggtgtaaggggtactgtaaccctaaaagtacgcaaacactgaatctgacgacgacttgcagaaaagcggtggaaaatgagttttttgagtttattgaggtagaaagtgacgggaaattcaaattttttgataaaaattatatttgatcaaaattatacgaagaaattcgaattttttgacaaaatttcagaaaaaaattttgattttatctcaaaatgtcaacaaactgtggttcaattcgaatttctcgcaaaattttgagcgtggtcagtcgttactagacgtttctattccattttcagggctttcggggtactgtagtctcggaagtacgcaaacaccgaatcttacgacattgagcccaaacgagctaaaaaatgttgtcacggcctgttttgagcttctgagtttgaatttaagaatgaacacttttgaaaaaaataatagaaaaacaattttttttgggccaaaaaaaaatttttttccaaaatttcatccgaaattaactgatagattaattttaggattttaacatcatttttcacactttcagccctccaaaaaccctcccttaccttcattccgcattccattggcggtagatcagagaatgggacctcacgagtgttcagctcccacaacaatatagcaaatgaccacatatcggcagctctaatattcaagtcttctggagcccgtgacaaggcttctgggctcatccaggcaggcgaataggcttttccgacctcttggaacgagaatttcgtatctgccattgagagtttggcggtgagctcctcgtcgactacaacgtgtttggaggagaggtagaacctggaaactgggctttaggcttatgatagcttaaattatctgaaactctaaaattagttaagaaacgtaaaaaaatggggggaaaattaaaaaattaaaaaaaaaaaaaaaaaaaattttttttaagttttttttcgagtagtgccccaaaaactcttggattcctgaaaacaatttttgaaaatttttgttgtagctacttttcgaagaacattatttcaggcacattttaagccaaaaaccgtttgaaagtatcaaaaactaaaaaagttatgaacttttgaaatttggaaaaaaaaatccaaatttttttaaaaacataaaattcaaattttcccgccagaaaaatgggcggagcctataaaaatttatacttttctgggagctctttttaagctccattcaaccacactaacctcaaaagcatagggtccaaactgtgcaagtagctcattcctctagcaatgtccaacgcgaatctgacggcttgcccgtgatcaatgacgacagctgcaatattttattgattttattaaattatttcagcgatttttcacaaat