>F55C5.8.1 unspliced + UTR + 2000 upstream + 2000 downstream; +ive
strand; Sequence: 6737 bp
>Deletion size = 2300 bp
>srpa-68 sgRNA #1, Chr V, GAAGAACAACAAGGACTTAC; cut=12289364;
strand=-1; GC=40; 3'GG=no; folding=-0.0
>srpa-68 sgRNA #2, Chr V, CAGGGAAATGACAAACGACG; cut=12291644;
strand=-1; GC=50; 3'GG=no; folding=-0.0
| Name | Type | Orientation | Position |
|---|---|---|---|
| rskd-1_Unspliced_UTR | gene | reverse | 1..1694 |
| srpa-68-1 SV F | primer_bind | forward | 1129..1149 |
| srpa-68 Upstream Homology Arm | misc_feature | forward | 1991..2440 |
| Left Deletion Flank | misc_structure | forward | 2411..2440 |
| srpa-68 sgRNA #1 | protein_bind | reverse | 2441..2460 |
| srpa-68-1 WT F | primer_bind | forward | 4199..4220 |
| srpa-68 Downstream Homology Arm | misc_feature | forward | 4741..5190 |
| Right Deletion Flank | misc_structure | forward | 4741..4770 |
| srh-16_Unspliced_UTR | gene | forward | 4940..6737 |
| srpa-68-1 SV R | primer_bind | reverse | 5311..5332 |
gcagctctttgagccgttgccactagctgcccagccgtaactaagtagtcagctggagtctcttcgatttctgaatttatatatttttgaattcgccaaaaataagtgttctaccaatattatgatgcgtagatcctcgtaatcttgggaagagtcgtttcattgagcttttccttgcagttcgttgctcttcgtttgaagtttcggaagctatagccacgtccggaaattgaaagtcgtcgccagtctgaaaaatgagtggatatttcaaaaactattttactatttaattgaaaaatattttttatttctgattagatttttataatacattagacactacaaagaaaaagttcagtgaatacatggatatgacagaacttattgaggtgaaactgaagtgaacgaatcttttgagcgaaaataataatttagcaagtgggactgacttgttcgtgtgtcggttccaagagagcagcgtggttcggtgaatcggaatcactggaaataaattattttatagaaatgtgtacacagagatactaacctggaatttgtattgggttggtccaaaattgaagaagaattgtcataaaacacctcgtttccagtgatttcgtgtgccgtataggttttttctttggctttctgaaatgataaatatgttgttgagtggaaggaaaagtttcaaaatggtcaagagagtttcgatgaaattcggtttgtactcgtgccagtctgttccctggagactactatgggagtcttcgaaaatatggaaatattcgagaagttttcagttgttttgttttaattttcgagaacattttctcaaaagtaatacaaaaaactgaaacaaatcgtaaaattgacgagcatcgcgtcaacaagaaacaaacaagggaccaatttctttgtcaaaaagagaaaatgtgctagtgacatcatctgacgagacccttttcttcagtgtgtgagcatgactgtctgcgtcttatctgactctttttcgtatgtaaattctctcggcgtctcgatgctttagcattcagaaagaacgttacctcgacaaattcgtgtagaagacgtgatttacgtagaacttcgctgtcgaacacaaagtttaggcaggcttctatagcatgtcggcgctcttggatgacggatggatccgctgaaaaattagaagaaaaaataattgaagaataggattaaaaattatttcgagggaaaaagtgacacaaagtttagtatttaaggaaattaccaaaaacctacaagatccgatcaactttcccggtggaaaaacagggaaagttcctcgaagatacagctgtttatggagtttcgagattgccgcatgaagttttgtcatttctttatatcgagtgctcaatacaaaagttcgacgagaaacgtcatttgcgacgagatgggatgccactggattacattcaatttcgacagtgtaaactgtatgcgaaccagtaagatgtttctcttcggaaattgatgttactgtagagctgcatgaccagtcagtctgaaaattagcttattggcaagttggaaaaaacttctagaagtatctataggaataagcttttattaaccttaagttggtaaagtatccttcctatatcacttgtgcagtagctttcatctggatataacgagctcatctttcatactttcctgaaatgattgaaacttaaaacttcagaagttgtaattattaacaaaaaatcaacattcagggccaaaatagaattctacacatttagaacttttcaaaagttggaaaaactggcagataggaaaataaaatcgttcgggtttgtttacaattccgtgtcatttcaatcatgttgtctgcgtctcctgattttgtgaaatgaccaacaagatcgatgaggttgcgaaagaaaagaagatcataaaatatttttgcaaaggtttttatattttctcacctttatagaaaaatgggaaacttgaattcacaataaatatctttattaaaacgagactctgattccgaatagtacgaaacgccgttccaataaaaaacgaagtttccaagaagagatgagggcaggggaaaggtgtggatgaaggtatcaaataaataccttagctatttttgaatcaaaccataaaaaaagagcaaaaagtctggggtagaaatgaatatggtatcacaagaaatttagagaaatgttactttgtaacaaaatctcagaaaattgaagacaggaaagaacagaagaactgtgtgaaaaaccagaaaaaaaacattaaatatgagaaactgggccgatgcaagaggtatctatggacaacgaaacaacagtaacaaatgataattaatactctattcaacgtcttcgtagtcTTATTTATTTCCCCAGAAACTCTTTTTCCACCCGGAAAGCATTCCAGTAAGTCCTTGTTGTTCTTCTTCTTCTTGATTTGAAGTTTTTGACGAAGCAGCTGCTGCAGAAGATCCTTTCGCTGCCTTCTTTGGAGTAGCATCACGATCTTTTTGGAGTTTTTCAAGACGGTCATCAACATTGGGCATctgtaaataattgtttaaaactaaatacttttttgatgaataagtttagataaaattttgatcagcaagttcaaaaatatgataaatataaattacagcatagcatcaaacatgttttctctttgtttttaatggaaaacaacgattagtgtttttttttcaagtgaatacgaattgtcttactcttgcaaaagtcgaaaaattggaatttctaaactacaaaacgattttttaatttatataccaagttttgcgtgatgaaaaaacttacGGTAAGATGGAAGTTTGCCAAATCGAAGAAAATAGGTTTGTTCGGCATTGGAATAAAAGCTGGTGGTAAACTGGCAACTGGAATTGTCTTTTTATCTTTCAAGGAGTTACGAACATCCCATTGACGCCATTCATTGACTGTCTCCAGAAGTGGGCGTTTATCAATAATCTTGGCAAGTTCCGAATCGGTTTTAACATCTCCAGCAGCGGAAGCCAAACGAGCAGCTCGTACAGTAACCTTCGCAGATTCCACTTCAGATCGGAGCTCATTCAATGACGATTGAGTTTCATTGGTGATAAATGAGCTCGATTTTAATTTCTTAAGTTTTCCTTCTGCATCTTGAACTCGAGAAACAGTTCTGTCAAAGAGAGCAGCGGCTTCACTGTACTTATGAAGAGCAGAATAAGAAGAAGCCATATAGAAACATCTGAAAGCTCTGTAGTACTCAACTTTGACTTCAAATGCTTGAATAAGATTTTTGTCATGATCAGCTCCCGGGATTTCTGCGACTTCTTTGTAAATTTCGATAACAGAATCGTAGAGTCTCAAAAGATCTTGAGGTTTGCTCTTCTTTTCACTTTTTGTGTTATCAATAATAGCCAAGTAACGCGAAGCAGTTCCGTTCATTTTCAGGAATTCCAAATAAGCCTTGATTGATTGAAGAACAGTCGTGTCAGCATTTTCAGAACTTTTACGGCGAATAATATCCGAAATTCGATCTATAGCATCACGAGTATCAGCGGTGGCTTTTTCAAAGAGAGCCATTTTCTCTTTTGGAGTTTGGCATTGTGCCAATTCGACTTCTGTTTGCTTCCATTCTTGAACAACTTGCTTTGCTTTTTCATCGTCAACAGTACTCTTAGCTCCTCCCCATTCGATGGTGACAACTTCAGCGGATGTAGCAGAAGCTCGCATTTCCGAGATTAGTTTctgaaaacatatttatttgttaattttttttcttaatacttacATCAACAGAACTGTCTCCTCCTTCTCCCATTTGCATTCTCAATTCCATAAGCTCTGTCATTGTTCCAACAGCACCAGGAGACTCGGCGATATTGAATTCACAAAGTCGAAGTTGAGGTTGAATTTCACGACAACGACCCTTGAAAATCGAAGAAAGTGTAGTGTTGTTGGTGGCTTCAGCAAGCTTCTCATAAACAGTTTTAGCGAGCTTGAGGGATTCAGATGCTTTCTGCCAGTTTCGAGATTCAAAAGAGCACATTCCACGCATCCATGCTGCATAAGCTTGCGCTTCGAGTTTTGTTGGAGCGTCAAActgaaaataaagtgtatctggtcatcaaacaaagattttctctctttctttctgctcaaacttacTCTTTCGCTTTCCTGGACGATTTTTTCGAGATTTGTAGCGTGAAGAACAGCCTTACGGAGTGAATTTATCATTGAAAACTTCTTTCTTGACTTTTCTGGGTTGTCTTCAAGCGTGATCTTGTCAATCATTGCTTCAGCGTATCTCCGCTCTGATTCGAAAATTCCAAAATTAAGAAATTGCACATTTTGCACCGACTCCACAGAAAGCCACTTTTTGACAAACTTCGCTTTTCTCTTCTTCTGGCAATTGTGCGAATTCGTGAATTTCAATGCTTTTCTCATGCGCTCCAACTTTGCTGCACAGTACTTTctgaataaaatcggttatttaatgttttaatcctagcattgttacCTATAGCGAGCATAATCACCATGTCGTAAACCGTGTTGCTGTTGAGCGTCTTTTACGACctgaaaatatattgtttttattcaaaataagaagaaaaactattacCTGAAGAATATGAACAGTGGGGAATGGTGGAAGCTCTTCAGTCTCTGATTTCATCTCCACGTCGTTTGTCATttccctgaaaatattgaatttaaatatttaaatgttaattttacataaagaactaagtttctttgatgaaaaaataaaaaagaacggaaatattggacacatcggcagaaagcaaaaactgcgtcagcacagaagcgcgccagtgaccgcgctgcttgcgcactctccgatgaaatttgcggtttttcaaataaatataactgcaagaaaatccaaaattaccgtactttattttacgttgtatttaatgtttttttgttttccaataatgataagaacagagatgagcacagaaatctatacttttcgtttgaaaattacgttagataatctattataaataattcaattgtaatttaaatggcaaatcaattggtaattgatcaggttctcattcatacaaaattttgctcaatatttcagaaaacatcgatttagtttgatcatttggactaatctgattctgaaagttataatttattttatacacctcctcgtgctctgtaatatgtcatgtttgagtattgaattcattttctaacaacttttttctaaaaacatgcaggaaatgcattgtcaaacgccaccgatttcagtatataagttagtttttcataatgaaaagttaaaacctcattttaatttcagaacactcatgcatactctccatattctcgacgtaccactttatctgattgtgataatcgcccttttcaaaattaaatcaaatatttttcaaacgtataaatactatttgatatggcatacaataatgtgatctaacttctgaaaaggttttcaaaattttgtaacattttttagaaatgtgctcaccgagtttcatagctgctttctcatgcttccagttgttcatctaccgtacccattactacgtgcaactggaattctcgcagaatttggatttagtggcttattcttgttttatgtcctatctgcatttattatacgtgagttgaatattagtttaaaattaatcgatcgaaaaacacttttctatgtttcagaaacttcattttcaattatcgagatgttctatttccgatacaaagctagcgtttttgactatcaaagccgaaacttcacaaaattcgtaaagctattcatatattcatttcgtgttttaacgattctctttcctggaatcacattcggaacatttttctatagtattgaacgacaagaagaatacaaaaaagagcttgcaatggtagcgtatcaaaaatatttctagatgtgaaagattttaataaaaagtaatagaaacaacgctcgaattatcaaattaaataaaagaataagacataaagattagtgaattctaaatgcttttacaaaatttagcaatcgatccttaaacggcgcgcttttttgctgattctttttgcatttagcattcgaaatattcatctatgtcccatttataaagctttaaataaaagttgaaccagttcgtacgcttgtaaactccgccagcctctgcggaacacaaaaagtccactgatcgattgataaattttgagagtaatttcaaacagtcaatgatctatgttaagattgatccatcaattcctgaagtaacatgttattcatcagtacttgctgctccgttttccgattccgtaatgatatctacaatgattacctggttggcatgtataatttgtgcattctcagtaattccaagcaccactatttatttgaattctcatttgcggagtacgaaaaatatgtctccaggagttgtaaggatgcagaaaatgcttttatcaagtttgatcgttcaggtatataacatgataattttatattaagaaaatttaattttcagacattcgttcacggattcatgttgggaatacctaatattctgttcgtttacacaatattttttggggctcatcttgaaggtataattttatcttaaaaccggcatttcatctattattattttcagttgcggcatacgcagcattcatgtgtctg