Gene Information: rrf-3

Namerrf-3 View on WormBase
Species C. elegans
SequenceF10B5.7
Genetic positionII:0.74 +/- 0.001 cM
Genomic positionII: 8162465..8168651

Strains carrying this gene

Strain Genotype Description
AGD885 rrf-3(b26) II; fem-1(hc17) IV; uthEx633. uthEx633 [myo-3p::GFP]. Maintain at 15C; sterile at 25C. Pick animals with GFP expression in body wall muscle to maintain. Reference: Vilchez D, et al. Nature. 2012 Sep 13;489(7415):263-8.
AGD886 rrf-3(b26) II; fem-1(hc17) IV; uthEx557. uthEx557 [sur-5p::rpn-6 + myo-3p::GFP]. Maintain at 15C; sterile at 25C. Pick animals with GFP expression in body wall muscle to maintain. Reference: Vilchez D, et al. Nature. 2012 Sep 13;489(7415):263-8.
BA15 rrf-3(hc15) II. Temperature sensitive. Maintain at 15C.
BB261 adr-1(uu49) I; rrf-3(uu56) II; adr-2(uu28) III. Enhanced RNAi. Lacks RNA editing. Vulval bursting. Low brood size. Triple mutants display bursting and low brood size phenotypes not observed in adr-1;adr-2 or rrf-3 parental strains. Reference: Reich DP, et al. Genes Dev. 2018 Feb 1;32(3-4):271-282.
BB270 adr-1(uu49) I; rrf-3(uu56) II; adr-2(uu28) III; rde-1(uu51) V. RNAi deficient. Lacks RNA editing. Reference: Reich DP, et al. Genes Dev. 2018 Feb 1;32(3-4):271-282.
BB272 adr-1(uu49) I; rrf-3(uu56) II; adr-2(uu28) rde-4(uu53) III. RNAi deficient. Lacks RNA editing. Reference: Reich DP, et al. Genes Dev. 2018 Feb 1;32(3-4):271-282.
BB278 adr-1(uu49) I; rrf-3(uu56) II; adr-2(uu28) III; ggIs1 IV. ggIs1 [nrde-3p::3xFlag::GFP::nrde-3 ORF + unc-119(+)] IV. Nuclear GFP::NRDE-3 signal. Enhanced RNAi. Lacks RNA editing. Vulval bursting. Low brood size. Triple mutants display bursting and low brood size phenotypes not observed in adr-1;adr-2 or rrf-3 parental strains. Reference: Reich DP, et al. Genes Dev. 2018 Feb 1;32(3-4):271-282.
CF1814 rrf-3(pk1426) II; daf-2(e1370) III. Daf-c at 25.5C; grow at 20C or less. Long lived.
CF1844 rrf-3(b26) II; daf-2(mu150) III; fem-1(hc17) IV. Long lifespan. Maintain at 15C. Worms develop slowly at 20C, and are sterile at 25C. Reference: Garigan D, et al. Genetics. 2002 Jul;161(3):1101-12.
CF1980 rrf-3(pk1426) II; daf-2(e1368) III. Daf-c at 25.5C; grow at 20C or less. Long lived.
CF512 rrf-3(b26) II; fem-1(hc17) IV. Grow at 15C. Sterile at 25C.
DH26 rrf-3(b26) II. Temperature sensitive. Spermatogenesis defective. Rescue by mating with WT male. Sterile at 25C.
DR2153 rrf-3(b26) II; liv-4(m872) V. Weak Unc (kinker) as adult. Increased life span. Maintain at 15C.
DR2168 liv-2(m882) rrf-3(b26) II. Approximately 30% dauer at 27C. Probably thermotolerant because it comes from a thermotolerant selection, but it was not retested. Increaesed longevity. Maintain at 15C.
DR2203 daf-16(m26) I; rrf-3(b26) liv-2(m882) II. daf-d. Maintain at 15C.
DR2208 daf-16(m26) I; rrf-3(b26) II; liv-4(m872) V. daf-d on starvation. Sterile at 25C. Maintain at 15C. Mild Unc.
IU10 daf-16(mgDf47) I; rrf-3(pk1426) II.
IU7 rrf-3(pk1426) II; sir-2.1(ok434) IV.
JU2058 rrf-3(pk1426) II; mfIs70 IV; rde-1(ne219) V. mfIs70 [lin-31p::rde-1 + myo2p::GFP]. mfIs70 is a spontaneous integration in LG IV. Superficially wild-type. This strain can be used for Pn.p-specific RNAi. Reference: Barkoulas et al. (2013) Developmental Cell Jan 14;24(1):64-75
LH191 lrp-1(ku156) eqIs1 I; rrf-3(pk1426) II. eqIs1 [lrp-1::GFP] I. eqIs1 is a spontaneous insertion of an lrp-1::GFP transgene extremely close to the endogenous lrp-1 gene that completely rescues lrp-1(ku156) Mlt and larval lethality. Reference: Kang YL, et al. Mol Biol Cell. 2013 Feb;24(3):308-18.
MQ415 age-1(hx546) rrf-3(b26) II; gro-1(e2400) III. Slow growing. Not fertile at 25C. Daf-c at 27C.
NK1339 rrf-3(pk1426) II; qyIs127 V; qyIs166 X. qyIs127 [lam-1p::lam-1::mCherry + unc-119(+)] V. qyIs166 [cdh-3p::GFP::CAAX + unc-119(+)] X. Temperature-sensitive sterile; maintain at 20C or lower for optimum fertility. Increased sensitivity to RNAi when compared to wild-type animals. lam-1p::lam-1::mCherry expression can be weak and variable. Reference: Kelley, LC, et al. Developmental Cell. 2019 Feb 11;48(3):313-328.e8.
NK2115 cpIs121 I; rrf-3(pk1426) II; rde-1(ne219) V. cpIs121 [lag-2p::mNG::PH::F2A::rde-1] I. Temperature-sensitive: maintain at 16-20C. RNAi-response variant. RNAi-hypersensitized DTC-specific RNAi strain that labels all rde-1(+) cells with mNeonGreen. Reference: Linden LM, et al. Dev Biol. 2017 Sep 1;429(1):271-284.
NK640 rrf-3(pk1426) II; unc-119(ed4) III; rde-1(ne219) V; qyIs102. qyIs102 [fos-1ap::rde-1(genomic) + myo-2::YFP + unc-119(+)]. Uterine-specific RNAi.
NK741 rrf-3(pk1426) II; unc-119(ed4) III; rde-1(ne219) V; qyIs138. qyIs138 [unc-62p::rde-1(genomic) + myo-2::YFP + unc-119(+)]. VPCs sensitive to RNAi. Vul phenotype from lin-39 RNAi depletion.
NK742 rrf-3(pk1426) II; unc-119(ed4) III; rde-1(ne219) V; qyIs139. qyIs139 [unc-62p::rde-1(genomic) + myo-2::YFP + unc-119(+)]. VPCs sensitive to RNAi. Vul phenotype from lin-39 RNAi depletion.
NL2099 rrf-3(pk1426) II. Homozygous rrf-3 deletion allele. Increased sensitivity to RNAi when compared to WT animals. Deletion sequence (deletion in lower case letters, flanking undeleted sequence in capital letters): TGCACATATTctacagaatt ------- --------tacccgattaAATGGACAATT (from Plasterk Lab 11/05).
TJ1060 spe-9(hc88) I; rrf-3(b26) II. Temperature sensitive. Maintain at 15C. See also WBPaper00002184.
TJ1062 spe-9(hc88) I; rrf-3(b26) age-1(hx542) II. Temperature sensitive. Maintain at 15C. See also WBPaper00002184.
TJ401 age-1(hx546) rrf-3(b26) II. Temperature sensitive sperm defect, grow at 15C. Long life (1.7X N2 is typical). Low brood size (15% of N2 is typical).
TJ412 age-1(hx542) rrf-3(b26) II. Long life (1.7X greater than N2). Low brood size (10% of N2). Temperature sensitive sperm defect; grow at 15C. WT.
TJ415 age-1(hx546) rrf-3(b26) unc-4(e120) II. Long lived (1.4X CB120). Low brood size. Unc. Temperature sensitive sperm defect. Maintain at 15C.
TJ550 spe-9(hc88) I; rrf-3(b26) II; gpIs1. gpIs1 [hsp-16.2p::GFP]. Inducible GFP fluorescence after >1 hour heat shock at 35C. Temperature sensitive. Maintain at 15C.
VC407 rrf-3(ok629)/mIn1 [mIs14 dpy-10(e128)] II. F10B5.7. Heterozygotes are WT with semi-dominant GFP expression in pharynx. Segregates WT GFP, Dpy GFP mIn1 homozygotes and GFP- ok629 homozygotes (usually sterile adults, occasionally produce progeny). Pick WT and check for correct segregation of progeny to maintain. Attribution: This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence WBPaper00041807
YY13 rrf-3(mg373) II; oxls12. oxls12 [unc-47p::GFP + lin-15(+)]. Enhanced RNAi. Sterile at 25 degrees. [NOTE: the genotype of YY13 as previously annotated only as rrf-3(mg373)] References: Pavelec DM, et al. Genetics. 2009 Dec;183(4):1283-95. PMID: 19797044. McIntire SL, et al. Nature. 1997 Oct 23;389(6653):870-6. PMID: 9349821.